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Majority consensus maximum likelihood tree (250 bootstrap replicates) based on comparison of all analyzed protein markers, showing the relationships between the analyzed spounaviruses.Branch labels indicate their percent bootstrap support. Leaves are colored by proposed in-subfamily clustering: blue ? Bastille group, green ? Twort group, red ? Bacillus phage SPO1. Abbreviations include name of host taxon (Ba ? Bacillus, Bx ? Brochothrix, En ? Enterococcus, Lb ? Lactobacillus, Li ? Listeria, St ? Staphylococcus) and the bacteriophage name. All analyzed sequences are listed in Table S1.
Webpy Howto
For the moment I'm going to try using Webpy. Why?
Well I like the fact that Aaron could get an app up quickly without having to make lots of adjustments to existing code. I'm not so sure this is the case with django. Which bits can you use? What bits are being left out?
I suppose the biggest problem I have with django is the size of the codebase you have to upload. More code, more moving parts and the greater chance for something to go wrong. Plus the fact you have to use a hack to even start (django_bootstrap.py). I don't think this is the real problem though. The real problem starts when you have to set up your local application and try to get it to run on appengine. There is a couple of little tricks & problems I've found. The approach is far from seamless and prone to error that will compound adding large frameworks. Not a show stopper but annoying enough to slow you down. The google developers are really pulling the stops out for django support so don't assume not choosing django now will stop me using it in the future.
Problems
The following solutions below should give you enough information to get webpy up and running. If you have an questions thow a question to this google app-engine thread, twitter.com/bootload or email me. Below is a list of the problems you will encounter.
1) Cannot run webpy locally:
I've encountered a few problems. The first is "how do you run webpy locally?" The problem is you may have webpy installed, the webpy code (web tree) in your current directory. But how does your local code find it? [1] Hidden in the documentation is a hint to make a symbolic link to the code you wish to use. Here is how:
* We wish to use Webpy and "import web"
* make sure you have a copy of "bzr" (debian/ubuntu): "apt-get install bzr"
* download the latest (0.3) webpy install version (0.3): "bzr get webpy.org/bzr/webpy.dev/;
* install the latest webpy, cd into webpy.dev & install: "python setup.py install"
* in the directory you have installed your app-engine client, create a symbolic link to a newly created directory called "web" to your webpy installation.
* ln -s /usr/lib/python2.5/site-packages/web web
The result is something like this with the app-engine code, your code (helloworld & hellowebpy).
drwxr-xr-x 12 fb fb 4096 2008-04-18 20:09 .
drwxr-xr-x 18 fb fb 4096 2008-04-14 21:23 ..
-r-xr-xr-x 1 fb fb 1595 2008-04-03 11:05 appcfg.py
-r--r--r-- 1 fb fb 154 2008-04-03 11:05 BUGS
drwxr-xr-x 4 fb fb 4096 2008-04-16 22:16 demos
-r-xr-xr-x 1 fb fb 1713 2008-04-16 16:59 dev_appserver.py
drwxr-xr-x 5 fb fb 4096 2008-04-14 22:05 google
drwxr-xr-x 8 fb fb 4096 2008-04-03 11:05 google_appengine
drwxr-xr-x 6 fb fb 4096 2008-04-18 11:47 hellowebpy
drwxr-xr-x 6 fb fb 4096 2008-04-16 15:57 helloworld
drwxr-xr-x 5 fb fb 4096 2008-04-03 11:05 lib
-r--r--r-- 1 fb fb 4348 2008-04-03 11:05 LICENSE
drwxr-xr-x 2 fb fb 4096 2008-04-09 13:55 new_project_template
-r--r--r-- 1 fb fb 3476 2008-04-03 11:05 README
drwxr-xr-x 2 fb fb 4096 2008-04-09 13:55 templates
drwxr-xr-x 2 fb fb 4096 2008-04-09 13:55 tools
-r--r--r-- 1 fb fb 57 2008-04-03 11:05 VERSION
lrwxrwxrwx 1 fb fb 36 2008-04-16 23:11 web -> /usr/lib/python2.5/site-packages/web
This now allows you to run your webpy code on the development machine.
2) Run webpy remotely :
In your source code directory (in my case, hellowebpy) take a copy of the webpy.dev/web directory and paste it into hellowebpy/. The result is something like this:
drwxr-xr-x 6 fb fb 4096 2008-04-18 20:24 .
drwxr-xr-x 12 fb fb 4096 2008-04-18 20:09 ..
-rw-r--r-- 1 fb fb 223 2008-04-18 11:05 app.yaml
-rwxr--r-- 1 fb fb 844 2008-04-13 23:23 favicon.ico
-rw-r--r-- 1 fb fb 448 2008-04-18 11:47 hello.py
drwxr-xr-x 2 fb fb 4096 2008-04-18 11:07 images
-rw-r--r-- 1 fb fb 471 2008-04-18 11:47 index.yaml
drwxr-xr-x 2 fb fb 4096 2008-04-18 11:07 styles
drwxr-xr-x 2 fb fb 4096 2008-04-18 10:57 templates
drwxr-xr-x 4 fb fb 4096 2008-04-18 11:08 web
* cd up to the root directory with appcfg.py
* upload your code + the webpy "web" code using appcfg.py: "./appcfg --noisy -e foo@bar.com update hellowebpy/" (remember to use your email address)
3) Problems with errors and c-based code :
If you have installed code like Cheetah you will get an error saying you cannot run c-based code. The reason is the dev_appserver.py code assumes the Cheetah code you have is trying to make a call to some cPython code, strop (a C based, string library optomised for speed). [3] The solution is to un-install Cheetah from your system. The google app-engine code base has a modified version of Cheetah removing all C code based routines. Be warned.
4) Problems uploading new code? :
I've had problems updating code sometimes. I suspect caching is the problem. So go to your root directory in your account and search for ".app*". You should see the following files, .appcfg_cookies and .appcfg_nag. Delete them both. Create a new directory, delete the index.yaml and copy your old code into the new directory. Then re-run the upload sequence ... "./appcfg --noisy -e foo@bar.com update new_directory_with_your_code/"
Following these steps should allow you to run webpy. Remember the example Aaron shows is for version 0.3. It was mentioned in the google-appengine webpy post others managed to get 0.23 to work. Try what they suggest. The example code works as shown for 0.3.
Have fun.
Reference
[1] Google App Engine, Pure Python, "... You can include other pure Python libraries with your application by putting the code in your application directory. If you make a symbolic link to a module's directory in your application directory, appcfg.py will follow the link and include the module in your app ..."
code.google.com/appengine/docs/python/purepython.html
[2] Python docs, "common string manipulations, optimized for speed called by "import string" /usr/local/lib/python2.4/lib-dynload/strop.so"
<<< start
Made with a Anne Marie Horner lawn (the stripe) and a lawn by Cotton + Steel purchased from www.fabric.com/buy/0395399/cotton-steel-tokyo-train-ride-....
Faux Suede on the inside collar - easier and itch free against the neck. The colors were a great match...can barely tell the difference in this photo, but the suede is a tad, just a scooch, lighter.
Covered buttons are the Dritz kits, machine button holes.
My friend Abi gifted me this yardage; I sewed it up on my grandmother's 1950 Singer 15-91.
I've blogged a little about construction; I am proud of this coat. It is underlined in flannel and features five hidden pockets, a padded hem, bust and back waist darts, and a bias-blocked sleeve.
My grandmother personified both a mature and rugged personal style, as well as a pirate-mouth! :) I miss her very much.
一小時 RWD 就上手（SUSY responsive grid for compass.）
（怎麼課程有三小時？因為要讓你練習啊！）
如果你
使用 bootstrap/foundation grid 之後，才發現它的 responsive grid 設定很腦殘。
想要控制每個中斷點（breakpoint）的欄位設計，而不只是一起縮小寬度或取消欄位而已。
想學習一套 mobile first 版面設計的最佳實踐方式。
那你就該來玩玩SUSY！
當全天下了無新意的使用 bootstrap/foundation 之後，聰明人就該跳出來自己設計網站了。其實 CSS3 的 media query 只是一個規格書，該如何好好利用做出任意又靈活的 Responsive Web Design，從 SUSY 入門是一個非常棒的選擇，從初學到客製化排版系統，一小時就能上手。
Here with my Vancouver homeboys from outsourcingthingsdone.com checking out the new crop of startups.
Perfect collaboration between bootstrap, xDetailView, GroupGridView in real accouting application.
it is just too wonderful....
Identification of variant XMRV in prostate cancer patients using phylogenetic analysis.
A. envelope (env), B. polymerase (pol), and C. gag. Stability of the tree topology was tested using 1000 bootstrap replicates in both neighbor joining (NJ) and maximum likelihood (ML) methods. Bootstrap values >60 are shown at major nodes (NJ/ML). New sequences from the current study are boxed. Accession numbers for prototypical MLV sequences available at GenBank are XMRV VP35 = DQ241301, XMRV VP62 = DQ399707, XMRV VP42 = DQ241302, XMRV WPI-1106 = GQ497344, XMRV WPI-1178 = GC497343, XMRV PCA1–PCA17 = GU812341–GU812357, MLV DG-75 = AF221065, MLV MTCR = NC_001702, MLV AKV = J01998, MLV BM5eco = AY252102.1, Moloney MLV = J02255, Moloney neuropthogenic MLV variant ts1-92b = AF462057, Rauscher MLV = NC_001819, Friend MLV = X02794, mERV Chr 7 = AC167978, mERV Chr 7 = AC127565, mERV Chr 8 = AC127575, mERV Chr 12 = AC153658, mERV Chr 9 = AC121813, mERV Chr 4 = AL627077, mERV Chr 1 = AC083892), XMLV A2780 = FR670594, XMLV BHY = FR670595, XMLV Daudi = FR670596, XMLV EKVX = FR670597, XMLV IMR-5 = FR670598, XMLV MUTZ-1 = FR670599, XMLV S-117 = FR670600, XMLV TYK-nu = FR670601. Sequences denoted RAW are from the polytropic MLV isolated in HeLa cells used to develop the in-house WB test. Sequences coded as XMRV VP and PCA and WPI are from prostate cancer and CFS patients, respectively. Additional prostate cancer patient VP gag and pol sequences were kindly provided by Drs. Robert Silverman and Joe Derisi. Viral tropism, as determined by analysis of env sequences, is indicated by blue (xenotropic), purple (polytropic), and yellow (ecotropic) spheres.
A powerful Drupal theme to power your education-oriented site.
Ideal for universities & university departments, schools, seminars and online courses.
Find the top Bootstrap themes that are responsive for mobile and
tablets. Stunning website graphic designs using the Bootstrap layout..For more information to log in my website codeshop.co
Maximum likelihood phylogeny of ?9 desaturases in only social Hymenoptera.Bootstrap values greater than 50 are shown on the tree. Branches with a bootstrap value under 50 are collapsed to show unresolved parts of the tree and underline supported clades. Clades shown with vertical red bars correspond to well-supported clades chosen to perform selection analysis. Non-ant social insect desaturase sequences are shown in pink (Bter: Bombus terrestris; Bimp: Bombus impatiens; Amel: Apis mellifera; Aflo: Apis floridanus). Ant desaturase sequences are shown in red (Hsal: Harpegnathos saltator; Lhum: Linepithema humile; Cflo: Camponotus floridanus; Fexs: Formica exsecta; Pbar: Pogonomyrmex barbatus; Acep: Atta cephalotes; Aech: Acromymex echinatior; Sinv: Solenopsis invicta).
pictionid57358521 - catalog14039451 - titleatlas 72d details missile 72d lox bootstrap flexline date 03031966 - filename14039451.jpgImages from the Convair/General Dynamics Astronautics Atlas Negative Collection. The processing, cataloging and digitization of these images has been made possible by a generous National Historical Publications and Records grant from the National Archives and Records Administration---Please Tag these images so that the information can be permanently stored with the digital file.---Repository: San Diego Air and Space Museum
一小時 RWD 就上手（SUSY responsive grid for compass.）
（怎麼課程有三小時？因為要讓你練習啊！）
如果你
使用 bootstrap/foundation grid 之後，才發現它的 responsive grid 設定很腦殘。
想要控制每個中斷點（breakpoint）的欄位設計，而不只是一起縮小寬度或取消欄位而已。
想學習一套 mobile first 版面設計的最佳實踐方式。
那你就該來玩玩SUSY！
當全天下了無新意的使用 bootstrap/foundation 之後，聰明人就該跳出來自己設計網站了。其實 CSS3 的 media query 只是一個規格書，該如何好好利用做出任意又靈活的 Responsive Web Design，從 SUSY 入門是一個非常棒的選擇，從初學到客製化排版系統，一小時就能上手。
Made with a Anne Marie Horner lawn (the stripe) and a lawn by Cotton + Steel purchased from www.fabric.com/buy/0395399/cotton-steel-tokyo-train-ride-....
一小時 RWD 就上手（SUSY responsive grid for compass.）
（怎麼課程有三小時？因為要讓你練習啊！）
如果你
使用 bootstrap/foundation grid 之後，才發現它的 responsive grid 設定很腦殘。
想要控制每個中斷點（breakpoint）的欄位設計，而不只是一起縮小寬度或取消欄位而已。
想學習一套 mobile first 版面設計的最佳實踐方式。
那你就該來玩玩SUSY！
當全天下了無新意的使用 bootstrap/foundation 之後，聰明人就該跳出來自己設計網站了。其實 CSS3 的 media query 只是一個規格書，該如何好好利用做出任意又靈活的 Responsive Web Design，從 SUSY 入門是一個非常棒的選擇，從初學到客製化排版系統，一小時就能上手。
Copp's Hill Burial Ground, Boston, MA.
Nikon D200 HDR. N42 22.327' W071 03.368'
(featured on
matching people to places)
Here with my Vancouver homeboys from outsourcingthingsdone.com checking out the new crop of startups.
Here with my Vancouver homeboys from outsourcingthingsdone.com checking out the new crop of startups.
一小時 RWD 就上手（SUSY responsive grid for compass.）
（怎麼課程有三小時？因為要讓你練習啊！）
如果你
使用 bootstrap/foundation grid 之後，才發現它的 responsive grid 設定很腦殘。
想要控制每個中斷點（breakpoint）的欄位設計，而不只是一起縮小寬度或取消欄位而已。
想學習一套 mobile first 版面設計的最佳實踐方式。
那你就該來玩玩SUSY！
當全天下了無新意的使用 bootstrap/foundation 之後，聰明人就該跳出來自己設計網站了。其實 CSS3 的 media query 只是一個規格書，該如何好好利用做出任意又靈活的 Responsive Web Design，從 SUSY 入門是一個非常棒的選擇，從初學到客製化排版系統，一小時就能上手。
Here with my Vancouver homeboys from outsourcingthingsdone.com checking out the new crop of startups.
Third part of three (Figs. 3, 4 and 5): Phylogenetic tree of nifH protein sequences.50% majority rule consensus tree of 13,500 PhyloBayes [52] post burn-in trees, unrooted. Black values at internodes ?=? Bayesian Posterior Probability (if >0.5). Pink values ?=? MEGA5 [56] Maximum Parsimony (MP) bootstrap support (if >50). Green values ?=? GARLI [54] Maximum Likelihood bootstrap support (if >50). Terminal triangles represent monophyletic clades with MOTUs solely of one tree species origin, collapsed but keeping the internal distance (substitutions per site, see scale bar), in light pink ?=? 50?79 MP bootstrap support, dark pink ?=? 80?100 MP bootstrap support. Green color indicates MOTUs solely from Fagus origin, red color Picea origin and dark blue color mixed origin (with bars showing ratio of [green] vs. [red]). Terminal labels with sequences from this study: MOTU ID (SMOTU ?=? singleton MOTU), total number of sequences, FASY ?=? from Fagus, PIAB ?=? from Picea, followed by number of sequences in the same order, then forest management type(s) (AC.Conif ?=? managed spruce forests, AC.Decid ?=? managed beech forests, Extensiv ?=? extensively managed beech forests) and number of sequences in same order. Terminal labels with sequences from other sources: near BLAST hit, summary of ecological data of sequences in that MOTU. The width of visible terminal branches represents the number of sequences (size correct up to 10 sequences). To the right, amino acid sequence logos and Kyte-Doolittle hydophobicity alignments for labeled nodes on the tree. The small tree shape (based on screenshot from Archaeopteryx v.0.972 [66]) shows the position within the complete phylogenetic tree.
Made my simple quotes app responsive and flat html, performant, simple, mobile and web... best of all worlds.
Here with my Vancouver homeboys from outsourcingthingsdone.com checking out the new crop of startups.
Clear is a vue or Vuejs based admin template built with bootstrap, also comes with laravel version. It utilizes vuex, vue-router and comes with laravel spark skin.
Find the top Bootstrap themes that are responsive for mobile and
tablets. Stunning website graphic designs using the Bootstrap layout..For more information to log in my website codeshop.co
Scott B Reynolds gave a presentation on designing e-commerce websites. The discussion included Adobe Dreamweaver, Business Catalyst, and Twitter's Bootstrap v2. Hartford Adobe
一小時 RWD 就上手（SUSY responsive grid for compass.）
（怎麼課程有三小時？因為要讓你練習啊！）
如果你
使用 bootstrap/foundation grid 之後，才發現它的 responsive grid 設定很腦殘。
想要控制每個中斷點（breakpoint）的欄位設計，而不只是一起縮小寬度或取消欄位而已。
想學習一套 mobile first 版面設計的最佳實踐方式。
那你就該來玩玩SUSY！
當全天下了無新意的使用 bootstrap/foundation 之後，聰明人就該跳出來自己設計網站了。其實 CSS3 的 media query 只是一個規格書，該如何好好利用做出任意又靈活的 Responsive Web Design，從 SUSY 入門是一個非常棒的選擇，從初學到客製化排版系統，一小時就能上手。
Here with my Vancouver homeboys from outsourcingthingsdone.com checking out the new crop of startups.
一小時 RWD 就上手（SUSY responsive grid for compass.）
（怎麼課程有三小時？因為要讓你練習啊！）
如果你
使用 bootstrap/foundation grid 之後，才發現它的 responsive grid 設定很腦殘。
想要控制每個中斷點（breakpoint）的欄位設計，而不只是一起縮小寬度或取消欄位而已。
想學習一套 mobile first 版面設計的最佳實踐方式。
那你就該來玩玩SUSY！
當全天下了無新意的使用 bootstrap/foundation 之後，聰明人就該跳出來自己設計網站了。其實 CSS3 的 media query 只是一個規格書，該如何好好利用做出任意又靈活的 Responsive Web Design，從 SUSY 入門是一個非常棒的選擇，從初學到客製化排版系統，一小時就能上手。
My friend Abi gifted me this yardage; I sewed it up on my grandmother's 1950 Singer 15-91.
I've blogged a little about construction; I am proud of this coat. It is underlined in flannel and features five hidden pockets, a padded hem, bust and back waist darts, and a bias-blocked sleeve.
My grandmother personified both a mature and rugged personal style, as well as a pirate-mouth! :) I miss her very much.
My friend Abi gifted me this yardage; I sewed it up on my grandmother's 1950 Singer 15-91.
I've blogged a little about construction; I am proud of this coat. It is underlined in flannel and features five hidden pockets, a padded hem, bust and back waist darts, and a bias-blocked sleeve.
My grandmother personified both a mature and rugged personal style, as well as a pirate-mouth! :) I miss her very much.
Phylogenetic relationships among haplotypes and lineage subdivergence detected in Primula obconica.(a) The phylogenetic topography based on plastid DNA dataset. Bootstrap values of Maximum Parsimony analysis and posterior probabilities of Bayesian inference are given above and below branches, respectively. (b) Maximum Parsimony networks of chlorotypes identified by TCS. Each solid line between circles represents one mutational step between two chlorotypes based on most parsimonious algorithm. The small open circles indicate the missing chlorotypes (not sampled or extinct). The solid line in the middle position of the network represents the two main lineages identified in the phylogenetic analysis, while the dashed line indicates the subdivision in each main lineage. The arrow indicated the connection between Primua obconica and Primula barbicalyx. Yellow and green circles in (a) and (b) correspond to lineage A and lineage B, respectively, as shown in Figure 1. (c) The strict consensus of the Maximum Parsimony trees of ribotypes. The two main lineages are circled by a solid line, while a dashed line in each circle represents the subdivision in each main lineage. The terminal of each branch represents haplotype recovered from plastid DNA and ITS datasets (See Table 1 and 3).