dgg32
regprecise_workflow
Novichkov, 2010
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.
Hierarchical data organization in the RegPrecise database. Major objects in the database are TFs, TFBSs and target genes. TFs are attributed to a certain protein family and effector. Target genes participate in a particular pathway or process. Three major levels in the database are: (i) regulon constituted by a set of genes co-regulated by TF in a single genome, (ii) regulog formed by a set of orthologous regulons in a group of related genomes and (iii) collection of regulogs by one of four categories (see text). Each TF regulog is linked to a unique TFBS motif.
regprecise_workflow
Novichkov, 2010
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.
Hierarchical data organization in the RegPrecise database. Major objects in the database are TFs, TFBSs and target genes. TFs are attributed to a certain protein family and effector. Target genes participate in a particular pathway or process. Three major levels in the database are: (i) regulon constituted by a set of genes co-regulated by TF in a single genome, (ii) regulog formed by a set of orthologous regulons in a group of related genomes and (iii) collection of regulogs by one of four categories (see text). Each TF regulog is linked to a unique TFBS motif.