plosone-phylo
pone.0018496.g002
Neighbor-joining cladograms for Xanthomonas, Clavibacter and Ralstonia using ITS and RIF sequences.
RIF resolves closely related strains of Xanthomonas that remain unresolved with ITS. The neighbor-joining cladograms for A) Xanthomonas, B) Clavibacter and C) Ralstonia using the ITS and RIF markers from fully sequenced strains in GenBank (Table 1). Bootstrap values >50% (shown at the node) are expressed as a percentage of 5,000 replicates. Red boxes contain two X. oryzae pv. oryzae strains resolved by one SNP between RIF sequences and zero SNPs between ITS sequences. Likewise, blue boxes contain two X. campestris pv. campestris strains resolved by five SNPs between RIF sequences and zero SNPs between ITS sequences. The RIF and ITS sequences of Xoo strains 10331 and PXO99 are identical. Xylella fastidiosa, Burkholderia mallei and Leifsonia xyli are included as outgroups.
pone.0018496.g002
Neighbor-joining cladograms for Xanthomonas, Clavibacter and Ralstonia using ITS and RIF sequences.
RIF resolves closely related strains of Xanthomonas that remain unresolved with ITS. The neighbor-joining cladograms for A) Xanthomonas, B) Clavibacter and C) Ralstonia using the ITS and RIF markers from fully sequenced strains in GenBank (Table 1). Bootstrap values >50% (shown at the node) are expressed as a percentage of 5,000 replicates. Red boxes contain two X. oryzae pv. oryzae strains resolved by one SNP between RIF sequences and zero SNPs between ITS sequences. Likewise, blue boxes contain two X. campestris pv. campestris strains resolved by five SNPs between RIF sequences and zero SNPs between ITS sequences. The RIF and ITS sequences of Xoo strains 10331 and PXO99 are identical. Xylella fastidiosa, Burkholderia mallei and Leifsonia xyli are included as outgroups.