plosone-phylo
pone.0024267.g002
Comparison of cladograms based on WGPScanning (A) and CGH (B) data for the tested strains.
The UPGMA trees shown were calculated from difference matrices with BioNumerics. In WGPScanning analysis, amplicons in the tested strains that were identical to, larger than or smaller than those of N16961 were assigned values of 1, 2 or 0.75, respectively. For the region that did not produce any amplicons, a value of 0 was assigned. In CGH analysis, final absent or present calls for each gene of each tested strain were assigned the value 0 or 1, respectively.
pone.0024267.g002
Comparison of cladograms based on WGPScanning (A) and CGH (B) data for the tested strains.
The UPGMA trees shown were calculated from difference matrices with BioNumerics. In WGPScanning analysis, amplicons in the tested strains that were identical to, larger than or smaller than those of N16961 were assigned values of 1, 2 or 0.75, respectively. For the region that did not produce any amplicons, a value of 0 was assigned. In CGH analysis, final absent or present calls for each gene of each tested strain were assigned the value 0 or 1, respectively.