plosone-phylo
pone.0036518.g002
Neighbor Joining cladogram based on Single Nucleotide Polymorphisms (SNPs) identified between P. syringae pv. actinidiae (PSA) genomes and P. syringae pv. theae.Sequencing reads of nine PSA genomes were aligned against a draft genome of P. syringae pv. theae pathotype strain NCPPB 2598. A neighbor joining tree was built based on 21,494 SNPs so identified. Country and year of isolation are indicated for each strain. Bootstrap values based on 1000 bootstrap replicates are shown above nodes and number of SNPs compared to P. syringae pv. theae are shown underneath branches. Branches with less than 50% bootstrap support were collapsed. In the Japanese/Korean clade three SNPs group PsaKN.2 with PA459 and thus conflict with the branching pattern obtained in the tree. No SNPs conflict with the branching pattern obtained for the Chinese/European clade. A Bayesian tree was also constructed and had the same topology as the neighbor-joining tree.
pone.0036518.g002
Neighbor Joining cladogram based on Single Nucleotide Polymorphisms (SNPs) identified between P. syringae pv. actinidiae (PSA) genomes and P. syringae pv. theae.Sequencing reads of nine PSA genomes were aligned against a draft genome of P. syringae pv. theae pathotype strain NCPPB 2598. A neighbor joining tree was built based on 21,494 SNPs so identified. Country and year of isolation are indicated for each strain. Bootstrap values based on 1000 bootstrap replicates are shown above nodes and number of SNPs compared to P. syringae pv. theae are shown underneath branches. Branches with less than 50% bootstrap support were collapsed. In the Japanese/Korean clade three SNPs group PsaKN.2 with PA459 and thus conflict with the branching pattern obtained in the tree. No SNPs conflict with the branching pattern obtained for the Chinese/European clade. A Bayesian tree was also constructed and had the same topology as the neighbor-joining tree.