plosone-phylo
Figure 1
Phylogenetic analysis of eIF4E and eIF(iso)4E from different plant species.The rooted phylogenetic tree was generated with DNAman using a bootstrap value of 1000. The tree uses full length amino acid sequences of eIF4E and eIF(iso)4E from different plant species. Numbers at the branch points identify the boot strap values. The human HseIF4E-1 was used as an outlier. The name and accession number of amino acid sequences used for phylogenetic analysis are: Prunus domestica (PdeIF4E, JX137116; PdeIF(iso)4E, JX137117), Pisum sativum (PseIF4E, AAR04332; PseIF(iso)4E, ABH09880), Glycine max (GmeIF4E, ACM45958; GmeIF(iso)4E, ACU23400), Vitis vinifera (VveIF4E, XP_002267488; VveIF(iso)4E, XP_002285444), Cucumis melo (CmeIF4E, ABD57970; CmeIF(iso)4E ABY56090), Populus trichocarpa (PteIF4E, XP_002316746; PteIF(iso)4E, XP_002312598), Citrullus lanatus (CleIF4E, ACN51299), Cucumis zeyherii (CzeIF4E, ABS18380), Cucumis sativus (CseIF4E, ABY56085; CseIF(iso)4E, ABY56102), Ricinus communis (RceIF4E, XP_002519771; RceIF4E-2, XP_002528368), Carica papaya (CpeIF4E, ACN38307; CpeIF(iso)4E, ACM18197), Lactuca sativa (LseIF4E, AAP86602; LseIF(iso)4E, AAP86603), Nicotiana tabacum (NteIF4E, CBJ34332; NteIF(iso)4E, AAU06579), Arabidopsis thaliana (AteIF4E, NP_193538; AteIF(iso)4E, NP_198412), Nicotiana benthamiana (NteIF4E, ABD57972), Zea mays (ZmeIF4E, ABD57972; ZmeIFiso4E, ACG47262), Sorghum bicolour (SbeIF4E, XP_002457018; SbeIF(iso)4E, XP_002467110), Solanum tuberosum (SteIF4E, CBJ34334; SteIF(iso)4E, CBJ34336), Capsicum annuum (CaeIF4E, AAN74644; CaeIF(iso)4E, AAY62607), Oryza sativa (OseIF4E, NP_001045525; OseIFiso4E, NP_001064810), Solanum habrochaites (SheIF4E, AAV88613), Solanum lycopersicum (SleIF4E, ABF83563; SleIF(iso)4E, ABV23495), Triticum aestivum (TaeIF4E, P29557; TaeIF(iso)4E, Q03389), Hordeum vulgare (HveIF4E, AAV80393), Phaseolus vulgaris (PveIF(iso)4E, ABU54805). To distinguish between the two RceIF4Es, XP_002528368 was labelled as RceIF4E-2 in the alignment. eIF4E and eIF(iso)4E sequences from different plant groups are color-coded (green: dicot eIF4E sequences; orange: monocot eIF4E sequences; blue: dicot eIF(iso)4E sequences; purple: monocot eIF(iso)4E sequences). The two plum sequences are highlighted in white.
Figure 1
Phylogenetic analysis of eIF4E and eIF(iso)4E from different plant species.The rooted phylogenetic tree was generated with DNAman using a bootstrap value of 1000. The tree uses full length amino acid sequences of eIF4E and eIF(iso)4E from different plant species. Numbers at the branch points identify the boot strap values. The human HseIF4E-1 was used as an outlier. The name and accession number of amino acid sequences used for phylogenetic analysis are: Prunus domestica (PdeIF4E, JX137116; PdeIF(iso)4E, JX137117), Pisum sativum (PseIF4E, AAR04332; PseIF(iso)4E, ABH09880), Glycine max (GmeIF4E, ACM45958; GmeIF(iso)4E, ACU23400), Vitis vinifera (VveIF4E, XP_002267488; VveIF(iso)4E, XP_002285444), Cucumis melo (CmeIF4E, ABD57970; CmeIF(iso)4E ABY56090), Populus trichocarpa (PteIF4E, XP_002316746; PteIF(iso)4E, XP_002312598), Citrullus lanatus (CleIF4E, ACN51299), Cucumis zeyherii (CzeIF4E, ABS18380), Cucumis sativus (CseIF4E, ABY56085; CseIF(iso)4E, ABY56102), Ricinus communis (RceIF4E, XP_002519771; RceIF4E-2, XP_002528368), Carica papaya (CpeIF4E, ACN38307; CpeIF(iso)4E, ACM18197), Lactuca sativa (LseIF4E, AAP86602; LseIF(iso)4E, AAP86603), Nicotiana tabacum (NteIF4E, CBJ34332; NteIF(iso)4E, AAU06579), Arabidopsis thaliana (AteIF4E, NP_193538; AteIF(iso)4E, NP_198412), Nicotiana benthamiana (NteIF4E, ABD57972), Zea mays (ZmeIF4E, ABD57972; ZmeIFiso4E, ACG47262), Sorghum bicolour (SbeIF4E, XP_002457018; SbeIF(iso)4E, XP_002467110), Solanum tuberosum (SteIF4E, CBJ34334; SteIF(iso)4E, CBJ34336), Capsicum annuum (CaeIF4E, AAN74644; CaeIF(iso)4E, AAY62607), Oryza sativa (OseIF4E, NP_001045525; OseIFiso4E, NP_001064810), Solanum habrochaites (SheIF4E, AAV88613), Solanum lycopersicum (SleIF4E, ABF83563; SleIF(iso)4E, ABV23495), Triticum aestivum (TaeIF4E, P29557; TaeIF(iso)4E, Q03389), Hordeum vulgare (HveIF4E, AAV80393), Phaseolus vulgaris (PveIF(iso)4E, ABU54805). To distinguish between the two RceIF4Es, XP_002528368 was labelled as RceIF4E-2 in the alignment. eIF4E and eIF(iso)4E sequences from different plant groups are color-coded (green: dicot eIF4E sequences; orange: monocot eIF4E sequences; blue: dicot eIF(iso)4E sequences; purple: monocot eIF(iso)4E sequences). The two plum sequences are highlighted in white.