plosone-phylo
Figure 1
Maximum-likelihood phylogenetic tree of the angiosperm PIN1.The ML tree was constructed based on the protein sequences of angiosperm PIN1 using MEGA5.2 with 1000 bootstrap replications and Jones-Taylor-Thornton (JTT) + Gamma Distributed model (Discrete Gamma Categories = 5). These PIN1 protein sequences were searched from Poaceae, Brassicaceae, Fabaceae, Rosaceae, Cucurbitaceae, Malvales, Malpighiales, Rutaceae, Solanaceae, Vitaceae, Caricaceae and Amborellaceae. The scale bar indicates the branch length that corresponds to 0.1 substitutions per site. The species and accession numbers are listed in Table S1.The abbreviations used are as follows: Bd, Brachypodium distachyon; Hv, Hordeum vulgare; Os, Oryza sativa; Pav, Panicum virgatum; Sb, Sorghum bicolor; Si, Setaria italica; Ta, Triticum aestivum; Zm, Zea mays; Al, Arabidopsis lyrata; At, Arabidopsis thaliana; Br, Brassica rapa; Cb, Capsella bursa-pastoris; Ch, Cardamine hirsuta; Cr, Capsella rubella; Th, Thellungiella halophila; Ca, Cicer arietinum; Gm, Glycine max; La, Lupinus albus; Mt, Medicago truncatula; Ps, Pisum sativum; Pv, Phaseolus vulgaris; Fv, Fragaria vesca; Md, Malus domestica; Pp, Prunus persica; Cus, Cucumis sativus; Mc, Momordica charantia; Gr, Gossypium raimondii; Tc, Theobroma cacao; Me, Manihot esculenta; Pt, Populus trichocarpa; Cc, Citrus clementina; Cs, Citrus sinensis; Nt, Nicotiana tabacum; Sl, Solanum lycopersicum; So, Solanum tuberosum; Vv, Vitis vinifera; Cp, Carica papaya; Amt, Amborella trichopoda.
Figure 1
Maximum-likelihood phylogenetic tree of the angiosperm PIN1.The ML tree was constructed based on the protein sequences of angiosperm PIN1 using MEGA5.2 with 1000 bootstrap replications and Jones-Taylor-Thornton (JTT) + Gamma Distributed model (Discrete Gamma Categories = 5). These PIN1 protein sequences were searched from Poaceae, Brassicaceae, Fabaceae, Rosaceae, Cucurbitaceae, Malvales, Malpighiales, Rutaceae, Solanaceae, Vitaceae, Caricaceae and Amborellaceae. The scale bar indicates the branch length that corresponds to 0.1 substitutions per site. The species and accession numbers are listed in Table S1.The abbreviations used are as follows: Bd, Brachypodium distachyon; Hv, Hordeum vulgare; Os, Oryza sativa; Pav, Panicum virgatum; Sb, Sorghum bicolor; Si, Setaria italica; Ta, Triticum aestivum; Zm, Zea mays; Al, Arabidopsis lyrata; At, Arabidopsis thaliana; Br, Brassica rapa; Cb, Capsella bursa-pastoris; Ch, Cardamine hirsuta; Cr, Capsella rubella; Th, Thellungiella halophila; Ca, Cicer arietinum; Gm, Glycine max; La, Lupinus albus; Mt, Medicago truncatula; Ps, Pisum sativum; Pv, Phaseolus vulgaris; Fv, Fragaria vesca; Md, Malus domestica; Pp, Prunus persica; Cus, Cucumis sativus; Mc, Momordica charantia; Gr, Gossypium raimondii; Tc, Theobroma cacao; Me, Manihot esculenta; Pt, Populus trichocarpa; Cc, Citrus clementina; Cs, Citrus sinensis; Nt, Nicotiana tabacum; Sl, Solanum lycopersicum; So, Solanum tuberosum; Vv, Vitis vinifera; Cp, Carica papaya; Amt, Amborella trichopoda.