plosone-phylo
pone.0042489.g001.png
ENG1 ML tree.Maximum Likelihood tree, based on JTT model of evolution, inferred using Eng1 protein sequence from the following species: S. Japonicus, S. Octosporus, S. Cerevisiae, S. Pombe, Kluyveromyces lactis, Debaryomyces hansenii, Candida Albicans, Yarrowia lipolytica, Aspergillus oryzae, Phaeosphaeria nodorum, Neurospora crassa, Vanderwaltozyma polyspora Neosartorya fischeri Pichia guilliermondii,Coccidioides posadasii, Gibberella zeae, Ashbya gossypii, Sclerotinia sclerotiorum, Magnaporthe grisea, Ajellomyces capsulatus, Aspergillus clavatus, Aspergillus niger, Pichia stipitis, Lodderomyces elongisporus, Candida glabrata,Candida Tropicalis,Candida dubliniensis,Candida parapsilosis; Brassica napus and Sorangium cellulosum are plant sequences used as outgroups, i.e. to facilitate the rooting of fungi phylogeny; we also include S. Japonicus Eng1 and Eng2 proteins and S. Cerevisiae Acf1 and Acf2 proteins. From a methodological purpose, we validate this phylogeny with a phylogeny with the same number of species, based on cdc5, a regulator of G2/M transition of mitotic cell cycle with the same visualisation as in [28]; the width corresponds to phylogenetic agreement.
pone.0042489.g001.png
ENG1 ML tree.Maximum Likelihood tree, based on JTT model of evolution, inferred using Eng1 protein sequence from the following species: S. Japonicus, S. Octosporus, S. Cerevisiae, S. Pombe, Kluyveromyces lactis, Debaryomyces hansenii, Candida Albicans, Yarrowia lipolytica, Aspergillus oryzae, Phaeosphaeria nodorum, Neurospora crassa, Vanderwaltozyma polyspora Neosartorya fischeri Pichia guilliermondii,Coccidioides posadasii, Gibberella zeae, Ashbya gossypii, Sclerotinia sclerotiorum, Magnaporthe grisea, Ajellomyces capsulatus, Aspergillus clavatus, Aspergillus niger, Pichia stipitis, Lodderomyces elongisporus, Candida glabrata,Candida Tropicalis,Candida dubliniensis,Candida parapsilosis; Brassica napus and Sorangium cellulosum are plant sequences used as outgroups, i.e. to facilitate the rooting of fungi phylogeny; we also include S. Japonicus Eng1 and Eng2 proteins and S. Cerevisiae Acf1 and Acf2 proteins. From a methodological purpose, we validate this phylogeny with a phylogeny with the same number of species, based on cdc5, a regulator of G2/M transition of mitotic cell cycle with the same visualisation as in [28]; the width corresponds to phylogenetic agreement.