plosone-phylo
pone.0032940.g004.png
Clustering analysis of the metabolic and cellular process proteins of 27 Mycoplasma species/strains and Phytoplasma OY.
The order of the Mycoplasma species is according to their phylogenetic relationship (23S rRNA tree). Each column represents the proteins of one single species/strain and each row (horizontal line) represents the copy number (grey color scale on top) of one gene. The sizes of the genomes in Mbp are indicated below the 3-letter abbreviated names of the organisms. Functional clustering and comparison of the proteins among species were based on KO (KEGG Orthology) assignments. The conservation of each gene among the Mycoplasma species (i.e. the number of Mycoplasma species possessing the gene) is shown on the right side of clustering result. Abbreviations – mha: M. haemofelis; mss: M. suis Illinois; msk: M. suis KI3806; mpe: M. penetrans; mga: M. gallisepticum; mge: M. genitalium; mpn: M. pneumoniae; mmy: M. mycoides; mcp: M. capricolum; mlc: M. leachii; mat: M. arthritidis; mho: M. hominis; mmo: M. mobile; mhr: M. hyorhinis; mhy: M. hyopneumoniae 232; mhj: M. hyopneumoniae J; mhp: M. hyopneumoniae 7448; mco: M. conjunctivae; mpu: M. pulmonis; mfm: M. fermentans M64; mfr: M. fermentans JER; maa: M. agalactiae PG2; mal: M. agalactiae 5632; mbv: M. bovis PG45; msy: M. synoviae; mcd: M. crocodyli; and poy: Phytoplasma OY.
pone.0032940.g004.png
Clustering analysis of the metabolic and cellular process proteins of 27 Mycoplasma species/strains and Phytoplasma OY.
The order of the Mycoplasma species is according to their phylogenetic relationship (23S rRNA tree). Each column represents the proteins of one single species/strain and each row (horizontal line) represents the copy number (grey color scale on top) of one gene. The sizes of the genomes in Mbp are indicated below the 3-letter abbreviated names of the organisms. Functional clustering and comparison of the proteins among species were based on KO (KEGG Orthology) assignments. The conservation of each gene among the Mycoplasma species (i.e. the number of Mycoplasma species possessing the gene) is shown on the right side of clustering result. Abbreviations – mha: M. haemofelis; mss: M. suis Illinois; msk: M. suis KI3806; mpe: M. penetrans; mga: M. gallisepticum; mge: M. genitalium; mpn: M. pneumoniae; mmy: M. mycoides; mcp: M. capricolum; mlc: M. leachii; mat: M. arthritidis; mho: M. hominis; mmo: M. mobile; mhr: M. hyorhinis; mhy: M. hyopneumoniae 232; mhj: M. hyopneumoniae J; mhp: M. hyopneumoniae 7448; mco: M. conjunctivae; mpu: M. pulmonis; mfm: M. fermentans M64; mfr: M. fermentans JER; maa: M. agalactiae PG2; mal: M. agalactiae 5632; mbv: M. bovis PG45; msy: M. synoviae; mcd: M. crocodyli; and poy: Phytoplasma OY.